Prostamax: Molecular Structure
Chemical properties, amino acid sequence, and structural analysis
📌TL;DR
- •Molecular formula: C20H36N6O8
- •Molecular weight: 488.54 Da
- •Half-life: Not characterised in PubMed-indexed literature
Amino Acid Sequence
15 amino acids
Formula
C20H36N6O8
Molecular Weight
488.54 Da
Half-Life
Not characterised in PubMed-indexed literature
3D molecular structure of Prostamax
Infographic pending generation
Amino acid sequence diagram for Prostamax
Infographic pending generation
Prostamax (KEDP) Molecular Structure#
Sequence#
Prostamax is a linear synthetic tetrapeptide with the sequence:
- Three-letter code: Lys-Glu-Asp-Pro
- Single-letter code: KEDP
- Composition: L-lysine (basic), L-glutamic acid (acidic), L-aspartic acid (acidic), L-proline (cyclic, conformationally restricted)
The peptide carries a free N-terminal amine (on lysine) and a free C-terminal carboxylate (on proline), with two acidic side chains (Glu, Asp) and one basic side chain (Lys). Proline's pyrrolidine ring imposes a conformational restriction at the C-terminus that limits backbone flexibility.
Mass and Formula#
- Molecular weight: approximately 488 Da
- Molecular formula: C20H36N6O8 (free peptide; varies slightly for salt forms)
- CAS Registry Number: not assigned in the public literature reviewed
Structural Characterisation#
There is no published crystal structure, NMR ensemble, or cryo-EM model of Prostamax in the public structural databases. The Protein Data Bank (PDB) does not contain a KEDP entry. The peptide's three-dimensional behaviour has not been characterised in PubMed-indexed structural biology literature.
This is a notable gap, because the Khavinson bioregulator framework proposes that KEDP binds DNA in a sequence-specific manner. Demonstrating that mechanism rigorously would normally require:
- Crystal structure of the peptide-DNA complex
- Or solution NMR data on peptide-DNA interactions
- Or surface plasmon resonance / isothermal titration calorimetry data quantifying binding affinity and specificity
- Or independent biochemical evidence of sequence-selective binding
None of these has been published in PubMed-indexed form for Prostamax specifically.
Stability#
Stability data for Prostamax (lyophilised powder and reconstituted solution) are not available in PubMed-indexed literature. General short-peptide handling principles -- cold storage of the lyophilised form, refrigerated short-term storage of the reconstituted solution -- are typically applied by vendors but are not Prostamax-specific.
Relationship to Other Khavinson Short Peptides#
Prostamax shares the short, charged-residue-dominated architecture of other Khavinson bioregulators. The closest comparators are:
- Vesugen (Lys-Glu-Asp / KED): a tripeptide that shares the N-terminal Lys-Glu-Asp motif of Prostamax. Vesugen is proposed as a vascular-endothelial bioregulator.
- Vilon (Lys-Glu / KE): a dipeptide that shares the first two residues. Proposed as a thymus/immune bioregulator.
- Epitalon (Ala-Glu-Asp-Gly / AEDG): a tetrapeptide with different N- and C-termini. Proposed as a pineal bioregulator.
Within the Khavinson program, the variation in the C-terminal residue (proline in Prostamax, glycine in Epitalon, arginine in Pinealon, etc.) is proposed to confer tissue-specific gene-regulatory activity. The independent structural and biochemical evidence supporting this tissue-selectivity model is limited.
Related Reading#
Frequently Asked Questions About Prostamax
What is the Prostamax sequence?
Prostamax is a tetrapeptide with the amino-acid sequence Lys-Glu-Asp-Pro, abbreviated KEDP using single-letter codes. The approximate molecular weight is 488 Da and the proposed molecular formula is C20H36N6O8 for the free peptide.
What is Prostamax's half-life?
The plasma half-life of Prostamax in humans has not been characterised in PubMed-indexed literature. Short peptides typically have very short plasma half-lives (minutes) due to rapid proteolytic degradation, though the Khavinson framework proposes that intact bioregulator activity at the gene-expression level does not require sustained plasma exposure.
Is there a published crystal structure for Prostamax?
No. There is no PDB entry for Prostamax. No crystallographic, NMR, or cryo-EM structure of KEDP -- either alone or bound to DNA -- has been published. The proposed peptide-DNA binding mechanism rests on inference rather than direct structural evidence.
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